Publications
Explore our newest publications to stay up-to-date with our latest research findings
Highlighted publications
The critical role of the endogenous immune compartment after CAR T cell therapy in recurrent GBM
Freeburg N. F.,*, Chafamo D*, Konanur Gopikrishna G., …….,Binder Z. A.,# Alanio C#, Silverbush D#, Cell, 2026, PMID: 42296961
A cellular epigenetic classification system for glioblastoma
Silverbush D, Jürgensen L, Freeburg N.F., Pooley C.S., Boniolo F, Gaiti F, Suvà M.L.,# Hovestadt V#, Neuro-Oncology, 2026, PMID:41499453
Multi omic single cell studies to decipher tumor heterogeneity and plasticity
Chaligne R*, Gaiti F*, Silverbush D*, Schiffman J*,…, Suvà M, Landau D. “Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states”, Nature Genetics, 2021, PMID: 34594037
Multi-omic cancer data integration reveals tumor progression programs
Silverbush D*#, Cristea S*#, Yanovich-Arad G, Geiger T, Beerenwinkel N and Sharan R. “Simultaneous Integration of Multi-omics Data Improves the Identification of Cancer Driver Modules”, Cell Systems, 2019, PMID: 31103572
The critical role of the endogenous immune compartment after CAR T cell therapy in recurrent GBM
Freeburg N.,F*, Chafamo D*, Konanur Gopikrishna G., …...., Binder Z. A.,#, Alanio C#, Silverbush D#, Cell, 2026, PMID: 42296961
A cellular epigenetic classification system for glioblastoma
Silverbush D, Jürgensen L, Freeburg N.F., Pooley C.S., Boniolo F, Gaiti F, Suvà M.L.,#.,Hovestadt V#, Neuro-Oncology, 2026, PMID:41499453
Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states”
Chaligne R*, Gaiti F*, Silverbush D*, Schiffman J*,…, Suvà M, Landau D., Nature Genetics, 2021, PMID: 34594037
A systematic approach to orient the human protein–protein interaction network
Silverbush D and Sharan R., Nature Communications, 2019, PMID: 31289271
Simultaneous Integration of Multi-omics Data Improves the Identification of Cancer Driver Modules
Silverbush D*#, Cristea S*#, Yanovich-Arad G, Geiger T, Beerenwinkel N and Sharan R., Cell Systems, 2019, PMID: 31103572
Electrical and synaptic integration of glioma into neural circuits
Venkatesh H, Morishita W, Geraghty A, Silverbush D,…, Monje M., Nature, 2019, PMID: 31534222
An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma
Neftel C*, Laffy J*, Filbin M*, Hara T*,…, Silverbush D,…, Tirosh I, Suvà M., Cell, 2019, PMID: 31327527
Cell-specific computational modeling of the PIM pathway in acute myeloid leukemia
Silverbush D*, Grosskurth S*, Wang D, Powell F, Gottgens B, Dry J and Fisher J., Cancer Research, 2017, PMID: 27965317
Network orientation via shortest paths
Silverbush D and Sharan R., Bioinformatics, 2014, PMID: 24470573
Optimally Orienting Physical Networks
Silverbush D*, Elberfeld M* and Sharan R., Journal Computational Biology, 2011, PMID: 21999286
Approximation Algorithms for Orienting Mixed Graphs
Elberfeld M, Segev D, Davidson C R, Silverbush D, and Sharan R.. Theoretical Computer Science, 2011, doi: 978-3-642-21458-5_35
Inference of Personalized Drug Targets via Network Propagation
Shnaps O*, Perry E*, Silverbush D and Sharan R., Pacific Symposium on Biocomputing, 2015, PMID: 26776182
ANAT 2.0: reconstructing functional protein subnetworks
Almozlino Y, Atias N, Silverbush D, Sharan R., BMC Bioinformatics, 2017, PMID: 29145805